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World Resources Institute: Coral Reefs Classified By Potential Threats From Human Activity

CLIMATE:
Reef Base

CORAL BLEACHING:
Coral Reef Ecology
Environmental Protection Agency
International Coral Reef Network
NOAA's "A Reef Manager's Guide To Coral Bleaching"
NOAA's Coral Health and Monitoring
Oceans Alive
Odyssey Expeditions
Reef Base
Reef Futures

CORAL FISH TRADE:
Reef Base
Global Trade and Consumer Choices: Coral Reef Crisis
National Public Radio: Coral Reefs in the Balence
Conservation International: Ravaging The Reefs
Researcher Finds Way To Raise Tropical Fish in Lab, Saving Coral Reefs

CORAL MINING:
Reef Base
Reef Check
International Coral Reef Information Network

DESTRUCTIVE FISHING PRACTICES:
Conservation Science Institute
Coris: Hazards to Coral Reefs
Marine Conservation Biology Institute
Reef Base
The World Bank Group: Blast Fishing In Indonesia

DISEASES & BIOLOGICAL INFESTATIONS:
Diseases of Coral Reefs
Global Coral Reef Alliance: Mysterious New Diseases Devastate Coral Reefs
Reef Base Diseases
Reef Base Biological Infestations

EUTROPHICATION: 
Global Coral Reef Alliance: Eutrophication
Reef Base

EXOTIC SPECIES:
Reef Base
Community Environmental Research in the Pacific Islands: Crown of Thorns Starfish

HABITAT LOSS FROM DEVELOPMENT:
Reef Base
Threats to Coral Reefs: Human Development
World Resources Institute: Reefs threatened by human activity

MILITARY/NUCLEAR TESTING:
Denix Coral Reef Conservation Guide For The Military
Department of Defense DENIX
Poisoned Pacific: The Legacy of French nuclear testing
Reef Base

OVER HARVESTING:
Barbara Best & Alan Bornbusch: Global Trade and Consumer Choices: Coral Reefs in Crisis
Coral reefs doomed, study says centuries of overfishing killing ecosystems
ICRAN article: Exploitive Overfishing
Reef Base
World Resources Institute

PHYSICAL IMPACTS: Ship Groundings & Anchor, Pipeline and Cable Damage
Groundings on coral reefs and seagrass beds
NOAA: Establishing No Anchor Areas To Protect Coral Reefs
Ship groundings smashing holes in Lauderdale coral reefs

POLLUTION:
Reef Base Industrial Pollution
Reef Base Marine Pollution

SEDIMENTATION:
Reef Base Manmade
Reef Base Natural
Threats to Coral Reefs

TOURISM:
Reef Base
The Negative Effects of Tourism on the Ecology of Jamacia
UNEP Tourism's Impact on Coral Reefs