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The colleges and universities listed below are American schools that have outstanding programs in marine science, oceanography and  environmental studies. If you have a school or institute  that you think should be added to this list, please email me.
 

Boston University -Marine Program
California State University at Long Beach - Marine Biology Program
Coastal Carolina University -Department of Marine Science
College of Charleston -Grice Marine Laboratory
Cornell University - Shoals Marine Laboratory
Duke University
Five Colleges of Western Massachusetts -Coastal & Marine Sciences Program
Florida Atlantic University -Department of Ocean Engineering
Florida Institute of Technology -Department of Marine & Environmental Systems
Florida State University -Department of Oceanography
Harbor Branch Oceanographic Insititution
Hawaii Pacific University -Marine Biology Programs
Marine Biological Laboratory -Woods Hole MA
MIT -Center for Oceanography and Physical Oceanography
North Carolina State -MEAS/Marine, Earth & Aatmospheric Sciences
Northeastern University -Marine Science Center
Old Dominion University -Ocean, Earth and Atmospheric Sciences
Oregon Institute of Marine Biology
Oregon State University -College of Oceanic Atmospheric Sciences
Princeton University -Program in Atmospheric and Oceanic Sciences
Rutgers University -IMCS/Institute of Marine & Coastal Sciences
Scripps Institution of Oceanography
Southhampton College -Marine and Environmental Programs
Stanford University -Hopkins Marine Station
State University of New York at Stony Brook -Marine Sciences Research Center
Texas A&M University at Galveston -Marine Program
The College of William & Mary -VIMS/Virginia Institute of Marine Science
United States Naval Academy -Departments of Oceanography and Meterology
University of Alaska -Institute of Marine Science
University of California - Marine Sciences
University of Colorado -PAOS/Program in Atmospheric and Oceanic Sciences
University of Connecticut -Marine Sciences Program
University of Delaware -College of Marine Sciences
University of Georgia -Department of Marine Sciences
University of Hawaii -SOEST/School of Ocean & Earth Science & Technology
University of Miami -RSMAS/Rosensteil School of Marine & Atmospheric Science
University of Mississippi -Insititute of Marine Science
University of North Carolina at Chapel Hill -Environmental Studies
University of North Carolina at Chapel Hill -Marine Sciences
University of North Carolina at Wilmington -Marine Biology Program
University of New England -Marine Biology Programs
University of Puerto Rico -Department of Marine Sciences
University of Rhode Island -GSO/Graduate School of Oceanography
University of South Carolina -Baruch Institute for Marine Biology & Coastal Research
University of Southern Mississippi -Department of Coastal Sciences
University of Texas -Marine Science Institute
University of Washington -College of Ocean and Fisheries Science
Woods Hole Oceanographic Institution

MBWEB -Marine Biology Web
Educational resource site about careers in Marine Biology
K-Adult Summer Opportunities in Marine Biology Study
Links to kindergarden to adult summer studies programs, including summer camps for kids